Package Basic.ChemicalMarkupLanguage
Chemical Markup Language (CML) provides support for most chemistry including molecules, compounds, reactions, spectra, crystals and computational chemistry.
These examples show how to visualize Chemical Markup Language (CML) molecular definitions, combined with previously designed X3D model prototypes, by converting CML molecule definitions in XML through CmlToX3d.xslt stylesheet transformations. This process is described in the paper "Stylesheet Transformations for Interactive Visualization: Towards a Web3D Chemistry Curricula," originally published in Proceedings of Web3D 2003 Symposium, St. Malo France, 9-12 March 2003, ACM Press.
This X3D Basic: Chemical Markup Language examples archive is online.
The X3D Java Scene Access Interface (x3djsail) package provides concrete classes for each X3D node and statement.
Online: X3D Java Scene Access Interface Library (X3DJSAIL) and X3DJSAIL Javadoc
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ClassesClassDescriptionAutogenerated version of _1_4_Dihydronaphthalene.x3d scene produced from _1_4_Dihydronaphthalene.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of _3_methyl_1h_indene.x3d scene produced from _3_methyl_1h_indene.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of AceticAcid.x3d scene produced from AceticAcid.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Alanine.x3d scene produced from Alanine.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of ButanedioicAcid.x3d scene produced from ButanedioicAcid.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Caffeine.x3d scene produced from Caffeine.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Cholesterol.x3d scene produced from Cholesterol.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Cortisone.x3d scene produced from Cortisone.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of CyclohexeneOxide.x3d scene produced from CyclohexeneOxide.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Cyclopentanamine.x3d scene produced from Cyclopentanamine.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Digitoxigenin.x3d scene produced from Digitoxigenin.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of DimethylSulfoxide.x3d scene produced from DimethylSulfoxide.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Ethanol.x3d scene produced from Ethanol.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of GlycerolDiacetate.x3d scene produced from GlycerolDiacetate.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Histamine.x3d scene produced from Histamine.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Oxytocin.x3d scene produced from Oxytocin.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of PyruvicAcid.x3d scene produced from PyruvicAcid.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of Riboflavin.x3d scene produced from Riboflavin.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of SomatoStatin.x3d scene produced from SomatoStatin.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of TartaricAcid.x3d scene produced from TartaricAcid.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of tetrahydrofuran.x3d scene produced from tetrahydrofuran.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of TransDCE.x3d scene produced from TransDCE.xml Chemical Markup Language (CML) version 1.0 source file.Autogenerated version of VitaminK.x3d scene produced from VitaminK.xml Chemical Markup Language (CML) version 1.0 source file.